miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|308798322|gb|HO807120.1|HO807120 GCATGTTTCAAATATACGTCACCTATAGATCTAGAAACCTGAATAATGCCTTTTACTCTCCACACTCCATGTTTGAGGAC
AACAATTTGAGGATCATGAGGGTGCAATTCTTTAAGTTCCTGTCTAACAGCCTCAAGATTTGCATTGTGTTCCGTAGACA
GCTGAATTGCAGCCATACCTCCAGTGTTGCCAACTTTCTTACCCAATACAACACGGGAATCTCCAACGTTTGCCACAAAG
AGTGTCTGTTGAAATATCACTCCCACTAGACAACAGGTCCCAGCACCCGCTATTTGAGGTCGAGCATTCCAGGAACCTGA
CACGAGGGCCGTGTATCCCTCTTCCGTCTGGCGGAATGCTCTTTCAATTGTCTCCGCTGTCACAAGCCCGCGTGACTCGG
CCGATGTTGCTAGAAAATGGCGAAACAAGTGATCGCAAACGTATCTGGAGGCGTCAGGCCCTCCGTGACCGTCGTATATG
CCGACGAAGGTACCGAGAGGACCGGACTCGATCTGGCTCTGGTCTTCGAGAACCTGGTTGGCCTGAACGACGGCCATGGA
GAAATCACCGGATGCATATTTTCCGACGTCGCGGAACCAGAGCAAGCCGTCTCTGCCTTCTCTCCCAGCGAATGTGCTCC
CGATAACTCCGATGGAATCCAATCGATCAGCATCGCGCCCGAACGGCTTCCAACAAAGCGAGAACAGATTCATCAATGCA
AGGAGCATACCACATCGCTCGGAAACCCT




Most similar to sp|Q0V7V2|P2C42_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0V7V2|P2C42_ARATH Probable protein phosphatase 2C 42
           OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1
          Length = 384

 Score =  346 bits (887), Expect = 1e-94
 Identities = 171/243 (70%), Positives = 199/243 (81%), Gaps = 5/243 (2%)
 Frame = -1

Query: 719 ALMNLFSLCWKPFGRDADRLDSI-----GVIGSTFAGREGRDGLLWFRDVGKYASGDFSM 555
           +LMNLFSLC+KPFG   D  ++      GV G T  G EG+DGLLWFRD+GKY  GDFSM
Sbjct: 4   SLMNLFSLCFKPFGHVCDNSEAGSGGGGGVSGGT--GGEGKDGLLWFRDLGKYCGGDFSM 61

Query: 554 AVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDASRYVCDHLFRHFLATSAESRGLVTA 375
           AV+QANQVLEDQSQ+ESG  GTFVG+YDGHGGP+A+RYVCDHLF HF   SAE++G+VT 
Sbjct: 62  AVIQANQVLEDQSQVESGNFGTFVGVYDGHGGPEAARYVCDHLFNHFREISAETQGVVTR 121

Query: 374 ETIERAFRQTEEGYTALVSGSWNARPQIAGAGTCCLVGVIFQQTLFVANVGDSRVVLGKK 195
           ETIERAF  TEEG+ ++VS  W   P +A  GTCCLVGVI+Q TLFVA++GDSRVVLGKK
Sbjct: 122 ETIERAFHATEEGFASIVSELWQEIPNLATVGTCCLVGVIYQNTLFVASLGDSRVVLGKK 181

Query: 194 VGNTGGMAAIQLSTEHNANLEAVRQELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDV 15
            GN GG++AIQLSTEHNAN E +R ELK+LHP DPQIVV +HGVWRVKGIIQVSRSIGD+
Sbjct: 182 -GNCGGLSAIQLSTEHNANNEDIRWELKDLHPDDPQIVVFRHGVWRVKGIIQVSRSIGDM 240

Query: 14  YLK 6
           Y+K
Sbjct: 241 YMK 243